YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX30_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.98
Transmembrane Helix	50	74	0.68
Non-Cytoplasmic	75	90	0.62
Transmembrane Helix	91	112	0.85
Cytoplasmic	113	130	0.82
Transmembrane Helix	131	153	0.92
Non-Cytoplasmic	154	160	0.74
Transmembrane Helix	161	183	0.87
Cytoplasmic	184	194	0.89
Transmembrane Helix	195	217	0.92
Non-Cytoplasmic	218	232	0.76
Transmembrane Helix	233	255	0.79
Cytoplasmic	256	268	0.83
Transmembrane Helix	269	294	0.83
Non-Cytoplasmic	295	303	0.82
Transmembrane Helix	304	328	0.87
Cytoplasmic	329	345	0.92
Transmembrane Helix	346	369	0.93
Non-Cytoplasmic	370	417	0.69
Transmembrane Helix	418	439	0.85
Cytoplasmic	440	446	0.39
Transmembrane Helix	447	470	0.86
Non-Cytoplasmic	471	498	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEDKILTET LLSAAEEPPA LPFSSVEDIP PITTVGGFVK EFNVEVKKLW YLAGPAIFMS  60
   61 ITQYSLGAAT QVFAGHISTI ALAAVSVENS VIAGFSFGVM LGMGSALETL CGQAFGAGKL 120
  121 SMLGVYLQRS WVILNVTAVI LSLLYIFAAP ILAFIGQTPA ISSATGIFSI YMIPQIFAYA 180
  181 VNYPTAKFLQ SQSKIMVMAA ISAVALVLHV LLTWFVIEGL QWGTAGLAVV LNASWWFIVV 240
  241 AQLVYIFSGT CGEAWSGFSW EAFHNLWSFV RLSLASAVML CLEVWYLMAV ILFAGYLKNA 300
  301 EISVAALSIC MNILGWTAMI AIGMNAAVSV RVSNELGAKH PRTAKFSLLV AVITSTVIGL 360
  361 AISIALLIFR DKYPSLFVGD EEVIIVVKDL TPILAVSIVI NNVQPVLSGV AVGAGWQAVV 420
  421 AYVNIVCYYV FGIPFGLLLG YKLNFGVMGI WCGMLTGTVV QTIVLTWMIC RTNWDTEAAM 480
  481 AEGRIREWGG EVSDQLLN