YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UGAL2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.94
Transmembrane Helix	11	31	0.84
Non-Cytoplasmic	32	42	0.72
Transmembrane Helix	43	69	0.77
Cytoplasmic	70	79	0.72
Transmembrane Helix	80	99	0.92
Non-Cytoplasmic	100	105	0.72
Transmembrane Helix	106	125	0.79
Cytoplasmic	126	132	0.80
Transmembrane Helix	133	152	0.59
Non-Cytoplasmic	153	157	0.52
Transmembrane Helix	158	176	0.58
Cytoplasmic	177	193	0.71
Transmembrane Helix	194	214	0.80
Non-Cytoplasmic	215	222	0.71
Transmembrane Helix	223	246	0.87
Cytoplasmic	247	255	0.68
Transmembrane Helix	256	276	0.81
Non-Cytoplasmic	277	283	0.74
Transmembrane Helix	284	302	0.96
Cytoplasmic	303	347	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKPESEKKS AVSDVGAWAM NVISSVGIIM ANKQLMSSSG FGFGFATTLT GFHFAFTALV  60
   61 GMVSNATGLS ASKHVPLWEL LWFSIVANIS IAAMNFSLML NSVGFYQISK LSMIPVVCVL 120
  121 EWILHSKHYC KEVKASVMVV VIGVGICTVT DVKVNAKGFI CACTAVFSTS LQQISIGSLQ 180
  181 KKYSVGSFEL LSKTAPIQAI SLLICGPFVD YLLSGKFIST YQMTYGAIFC ILLSCALAVF 240
  241 CNISQYLCIG RFSATSFQVL GHMKTVCVLT LGWLLFDSEM TFKNIAGMAI AIVGMVIYSW 300
  301 AVDIEKQRNA KSTPHGKHSM TEDEIKLLKE GVEHIDLKDV ELGDTKP