YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPT6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.87
Transmembrane Helix	40	62	0.87
Non-Cytoplasmic	63	67	0.72
Transmembrane Helix	68	90	0.78
Cytoplasmic	91	115	0.75
Transmembrane Helix	116	137	0.69
Non-Cytoplasmic	138	145	0.53
Transmembrane Helix	146	169	0.88
Cytoplasmic	170	209	0.69
Transmembrane Helix	210	231	0.89
Non-Cytoplasmic	232	255	0.84
Transmembrane Helix	256	275	0.83
Cytoplasmic	276	282	0.65
Transmembrane Helix	283	308	0.82
Non-Cytoplasmic	309	357	0.91
Transmembrane Helix	358	379	0.93
Cytoplasmic	380	412	0.91
Transmembrane Helix	413	434	0.94
Non-Cytoplasmic	435	442	0.76
Transmembrane Helix	443	465	0.92
Cytoplasmic	466	525	0.89
Transmembrane Helix	526	548	0.89
Non-Cytoplasmic	549	599	0.71
Transmembrane Helix	600	621	0.87
Cytoplasmic	622	630	0.42
Transmembrane Helix	631	645	0.50
Non-Cytoplasmic	646	646	0.17
Transmembrane Helix	647	665	0.83
Cytoplasmic	666	676	0.48
Transmembrane Helix	677	699	0.90
Non-Cytoplasmic	700	736	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEIATEFTP VMDDDDDRCV VPEVELTVPK TDDSTLPVLT FRMWVLGIGA CIVLSFINQF  60
   61 FWYRTMPLSI TGISAQIAVV PLGHLMARVL PTKRFLEGTR FQFTLNPGAF NVKEHVLITI 120
  121 FANSGAGSVY ATHILSAIKL YYKRSLPFLP AFLVMITTQI LGFGWAGLFR KHLVEPGEMW 180
  181 WPSNLVQVSL FGALHEKEKK SRGGMSRTQF FLIVLVASFA YYIFPGYLFT MLTSISWVCW 240
  241 LNPKSILVNQ LGSGEHGLGI GSIGFDWVTI SAYLGSPLAS PLFASVNVAI GFVLVMYIVT 300
  301 PVCYWLNIYD AKTFPIFSSQ LFMGNGSRYD VLSIIDSKFH LDRVVYSRTG SINMSTFFAV 360
  361 TYGLGFATLS ATIVHVLVFN GSDLWKQTRG AFQKNKKMDI HTRIMKKNYR EVPLWWFLVI 420
  421 LLLNIALIMF ISVHYNATVQ LPWWGVLLAC AIAISFTPLI GVIAATTNQA PGLNIITEYV 480
  481 IGYIYPERPV ANMCFKVYGY ISMTQALTFI SDFKLGHYMK IPPRSMFMAQ VAGTLVAVVV 540
  541 YTGTAWWLME EIPHLCDTSL LPSDSQWTCP MDRVFFDASV IWGLVGPRRV FGDLGEYSNV 600
  601 NWFFLVGAIA PLLVWLATKM FPAQTWIAKI HIPVLVGATA MMPPATAVNF TSWLIVAFIF 660
  661 GHFIFKYRRV WWTKYNYVLS GGLDAGSAFM TILLFLALGR KGIEVQWWGN SGDRDTCPLA 720
  721 SCPTAKGVVV KGCPVF