YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GC1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLCSPTSL SSSFALSSAL LVPRSFSMPG TRRFMVLCSS QKESQMTVSV TGATGFIGRR  60
   61 LVQRLRADNH AIRVLTRSKS KAEQIFPAKD FPGIVIAEES EWKNCVQGST AVVNLAGLPI 120
  121 STRWSPEIKK EIKGSRIRVT SKVVDLINNS PAEARPTVLV SATAVGYYGT SETGVFDENS 180
  181 PSGKDYLAEV CREWEGTALK ANKDVRVALI RIGVVLGKDG GALAMMIPFF QMFAGGPLGS 240
  241 GQQWFSWIHV DDLVNLIYEA LTNPSYKGVI NGTAPNPVRL GEMCQQLGSV LSRPSWLPVP 300
  301 DFALKALLGE GATVVLEGQK VLPVRAKELG FEFKYKYVKD ALRAIMQ

Type	Start	End	Confidence
Signal Peptide	1	27	0.94
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	347	0.98