YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23296336, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFLKATIIV ALICNFASLA SSVPFIVLHG IGDKCSNAGV TQFTELLSDW SGSQGYCLEI  60
   61 GNGSWDSWTM PLLDQTSVVC EKVKSMPELS DGYSIVGLSQ GNMIGRALIE FCDGAPPVKS 120
  121 FVSVAGPHAG TASIPFCGAT WICIMLDSMI KAEIYSDYMQ EHLAPSGFLK IPTDIAGYME 180
  181 GCRFLPKLNN ELPVKNSTYK ERFSSLENLV LIMFEHDTIL IPKETSWFGY YPDGSFKTIL 240
  241 PPQETKLYTE DWIGLRTLDE AGKVKFVNVS GNHLQISHTD MKKHIVPYLC DKSSSSSSTT 300
  301 MAVSGSSSSH QWLPSVGNII MDLIGPEVDQ LQLVLRHV

Type	Start	End	Confidence
Signal Peptide	1	20	0.83
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	338	0.92