YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	U88A1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEEAIVLYP APPIGHLVSM VELGKTILSK NPSLSIHIIL VPPPYQPEST ATYISSVSSS  60
   61 FPSITFHHLP AVTPYSSSST SRHHHESLLL EILCFSNPSV HRTLFSLSRN FNVRAMIIDF 120
  121 FCTAVLDITA DFTFPVYFFY TSGAACLAFS FYLPTIDETT PGKNLKDIPT VHIPGVPPMK 180
  181 GSDMPKAVLE RDDEVYDVFI MFGKQLSKSS GIIINTFDAL ENRAIKAITE ELCFRNIYPI 240
  241 GPLIVNGRIE DRNDNKAVSC LNWLDSQPEK SVVFLCFGSL GLFSKEQVIE IAVGLEKSGQ 300
  301 RFLWVVRNPP ELEKTELDLK SLLPEGFLSR TEDKGMVVKS WAPQVPVLNH KAVGGFVTHC 360
  361 GWNSILEAVC AGVPMVAWPL YAEQRFNRVM IVDEIKIAIS MNESETGFVS STEVEKRVQE 420
  421 IIGECPVRER TMAMKNAAEL ALTETGSSHT ALTTLLQSWS PK

Type	Start	End	Confidence
Cytoplasmic	1	110	0.51
Transmembrane Helix	111	130	0.42
Non-Cytoplasmic	131	462	0.62