YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TOM3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIGGVEVTK FASEMMSSSS SSAVEMLNLK EASNWWSDVN ESPIWQDRIF HVLAVLYGIV  60
   61 SLVAVIQLVR IQLRVPEYGW TTQKVFHFLN FVVNGVRAVV FVFRRNVQFM QPEILQHILL 120
  121 DIPSLAFFTT YALLVLFWAE IYYQARAVST DGLRPSFFTI NAVVYVVQIA LWLVLWWKPV 180
  181 RVMVILSKMF FAGVSLFAAL GFLLYGGRLF LMLQRFPVES KGRRKKLQEV GYVTTICFTC 240
  241 FLIRCIMMCF AAFDEGANLD VLDHPILNFI YYLLVEILPS SLVLFILRKL PPKRGITQYH 300
  301 QIR

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.56
Transmembrane Helix	49	71	0.89
Cytoplasmic	72	84	0.58
Transmembrane Helix	85	103	0.62
Non-Cytoplasmic	104	117	0.87
Transmembrane Helix	118	139	0.87
Cytoplasmic	140	156	0.80
Transmembrane Helix	157	176	0.94
Non-Cytoplasmic	177	188	0.81
Transmembrane Helix	189	211	0.90
Cytoplasmic	212	229	0.96
Transmembrane Helix	230	253	0.91
Non-Cytoplasmic	254	268	0.89
Transmembrane Helix	269	287	0.97
Cytoplasmic	288	303	0.93