YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RGXT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQKQQTLHQ QRPFSSSPRS YSSISNRPIF LLSRNGLLLV LLALFLLLGV FLPWPGSPLL  60
   61 LFPNKVSSPS YASSLSPHAK SEWRNYTLAQ AAKFVATNGT VIVCAVSSPF LPFLNNWLIS 120
  121 VSRQKHQEKV LVIAEDYITL YKVNEKWPGH AVLIPPALDS KTAYSFGSQG FFNFTARRPQ 180
  181 HLLQILELGY NVMYNDVDMV WLQDPFQYLE GSHDAYFTDD MPQIKPLNHS HDLPAPDQNG 240
  241 ETYICSCMIY LRPTNGAKLL MKKWSEELQS QAWSESIRFK ANDQPAFNLA LNKTAHQVDL 300
  301 YLLSQVAFPT GGLYFNDAAW VKETKGKHVI VHNNYIIGYD RKMRRFQDYG LWLVDDHALE 360
  361 SPLGKLQ

Type	Start	End	Confidence
Cytoplasmic	1	34	0.76
Transmembrane Helix	35	54	0.77
Non-Cytoplasmic	55	98	0.87
Transmembrane Helix	99	119	0.50
Cytoplasmic	120	367	0.53