YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Y2027_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.76
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFKMRSFVA FVLLLSWFGS CCSLKDQAVD FLKSEDSLKK DLSSDEDSTY LKAFGFHRKT  60
   61 LVRNPYKDLP SRKDRKNRVV AATTTPSSSP EPAPKHVSTK ASTVSEPQKR SSTQDVSPSP 120
  121 SAPLANSPIP RNSHSSVPLV VGCVGGAFFL LLVATGLYFF TSKAGKTVNP WRTGLSGQLQ 180
  181 KVFVTGIPVL KRSEIEAACE DFSNVIGSCP IGKLFKGTLS SGVEIAVASF ATTTAKDWKD 240
  241 STEIHFRKKI EMLSKINHKN FANLLGYCEE KEPFTRILIF EYAPNGSLFE HLHYKESEHL 300
  301 DWGMRLRIAM GLAYCLDHMH QLNPPIAHTN LVSSSLQLTE DYAVKVSDFS FGSSETETNI 360
  361 NNNTVIDTHI SALNPEDNIY SFGLLLFEMI TGKLIESVNK PDSVDSSLVD FLRGETLAKM 420
  421 VDPTLESYDA KIENIGEVIK SCLRTDPKER PTMQEVTGWL REITGLSPND ATPKLSPLWW 480
  481 AELEVLSTA

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	136	0.99
Transmembrane Helix	137	161	0.70
Cytoplasmic	162	489	0.71