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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NPC2_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKAFALIQ LLSVTILYNH VHATSPIKTI VVVVMENRSF DHMLGWMKKL NPEINGVDGS  60
   61 ESNPVSVSDP SSRKIKFGSG SHYVDPDPGH SFQAIREQVF GSNDTSMDPP PMNGFVQQAY 120
  121 SEDPSGNMSA SVMNGFEPDK VPVYKSLVSE FAVFDRWFAS VPSSTQPNRM FVHSGTSAGA 180
  181 TSNNPISLAK GYPQRTIFDN LDDEEFSFGI YYQNIPAVLF YQSLRKLKYV FKFHSYGNSF 240
  241 KDHAKQGKLP AYTVIEQRYM DTLLEPASDD HPSHDVYQGQ KFIKEVYETL RASPQWNETL 300
  301 LIITYDEHGG YFDHVPTPVR NVPSPDGIVG PDPFLFQFNR LGIRVPTIAV SPWIEKGTVV 360
  361 HGPNGSPFPS SEYEHSSIPA TVKKLFNLSS PFLTKRDEWA GTFENILQIR KEPRTDCPET 420
  421 LPEPVKIRMG EANEKALLTE FQQELVQLAA VLKGDNMLTT FPKEISKGMT VIEGKRYMED 480
  481 AMKRFLEAGR MALSMGANKE ELVHMKTSLT GRRP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle