YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18418200, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSGAISGA TVSSFFTKTT TTSNPSPKLH SSASLLSQKT VFQGVSLEDS KKSVSEIFAV  60
   61 SERKIGGLNG LRRFEIKARA AASKTIEVEV DKPLGLTLGQ KQGGGVVITG VDGGGNAAKA 120
  121 GLKSGDQVVY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVVSRGAEVD VKKLNKRPAP 180
  181 PRFGRKLTET QKARATHICL DCGFIYTLPK SFDEQPDTYV CPQCIAPKKR FAKYDVNTGK 240
  241 AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q

Type	Start	End	Confidence
Cytoplasmic	1	245	0.74
Transmembrane Helix	246	268	0.85
Non-Cytoplasmic	269	271	0.61