YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79326326, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.63
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQSQVSLFL LLILVFIYGV SSTTFTIVNQ CSYTVWPGLL SGAGTSPLPT TGFSLNPTET  60
   61 RVIPIPAAWS GRIWGRTLCT QDATTGRFTC ITGDCGSSTV ECSGSGAAPP ATLAEFTLNG 120
  121 ANGLDFYDVS LVDGYNIPMT IVPQGGGDAG GVAGNCTTTG CVAELNGPCP AQLKVATTGA 180
  181 EGVACKSACE AFGTPEYCCS GAFGTPDTCK PSEYSQFFKN ACPRAYSYAY DDGTSTFTCG 240
  241 GADYVITFCP SPNPSVKSAT KGVQPVAVSY SKASPNASPT LSAVFSIGVL AVASWVMQRV 300
  301 L

Type	Start	End	Confidence
Signal Peptide	1	22	0.92
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	278	0.96
Transmembrane Helix	279	297	0.65
Cytoplasmic	298	301	0.54