YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25407944, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVLFLQIIT CSLFTTTASS PHGFTIDLIQ RRSNSSSSRL SKNQLQGASP YADTLFDYNI  60
   61 YLMKLQVGTP PFEIEAEIDT GSDLIWTQCM PCTNCYSQYA PIFDPSNSST FKEKRCNGNS 120
  121 CHYKIIYADT TYSKGTLATE TVTIHSTSGE PFVMPETTIG CGHNSSWFKP TFSGMVGLSW 180
  181 GPSSLITQMG GEYPGLMSYC FASQGTSKIN FGTNAIVAGD GVVSTTMFLT TAKPGLYYLN 240
  241 LDAVSVGDTH VETMGTTFHA LEGNIIIDSG TTLTYFPVSY CNLVREAVDH YVTAVRTADP 300
  301 TGNDMLCYYT DTIDIFPVIT MHFSGGADLV LDKYNMYIET ITRGTFCLAI ICNNPPQDAI 360
  361 FGNRAQNNFL VGYDSSSLLV SFSPTNCSAL WN

Type	Start	End	Confidence
Signal Peptide	1	19	0.91
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	392	0.99