YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHSD_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	21	0.90
Transmembrane Helix	22	42	0.78
Non-Cytoplasmic	43	48	0.76
Transmembrane Helix	49	69	0.88
Cytoplasmic	70	83	0.62
Transmembrane Helix	84	101	0.79
Non-Cytoplasmic	102	159	0.50
Transmembrane Helix	160	184	0.90
Cytoplasmic	185	236	0.83
Transmembrane Helix	237	259	0.89
Non-Cytoplasmic	260	269	0.76
Transmembrane Helix	270	288	0.75
Cytoplasmic	289	329	0.71
Transmembrane Helix	330	350	0.88
Non-Cytoplasmic	351	358	0.70
Transmembrane Helix	359	379	0.89
Cytoplasmic	380	391	0.90
Transmembrane Helix	392	414	0.90
Non-Cytoplasmic	415	419	0.78
Transmembrane Helix	420	440	0.93
Cytoplasmic	441	479	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEEETIVND ENSSKPKPSP KLTLLPLVFL IFYEVSGGPF GVEDSVKSGG GPLLALLGFL  60
   61 IFPLIWSIPE ALVTAELATS FPENGGYVVW ISSAFGPFWG FQEGFWKWFS GVMDNALYPV 120
  121 LFLDYLKHSF PVLDHVAARV PALLVITFSL TYLNYRGLHI VGFSAVVLAV FSLCPFVVMA 180
  181 LLAVPNIRPK RWLFVDTQKI NWRGYFNTMF WNLNYWDKAS TLAGEVDRPG KTFPKALFGA 240
  241 VLLVMGSYLI PLMAGTGALS SSTSGEWSDG YFAEVGMLIG GVWLKGWIQA AAAMSNLGLF 300
  301 EAEMSSDAFQ LLGMSEIGML PAFFAQRSKY GTPTISILCS ATGVIFLSWM SFQEIIEFLN 360
  361 FLYALGMLLE FAAFVKLRIK KPDLHRPYRV PLNTFGVSML CLPPSLLVIL VMVLAAPKTF 420
  421 LISGVIIVLG FCLYPFLTLV KEKQWARFIP EETRPVSGVS SESQLDEEHG DESAASLLP