YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11357280, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.61
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFPSLSVSF LFFAFIFVTH AFDLSIIQMQ QGTCPYTVVV MTSCLSPEST RDQISIVFGD  60
   61 ADGNKVYAPK LGGLVRGPGG LGKCSTNTFQ VRGQCLNDPI CSLYINRNGP DGWVPESIEI 120
  121 YSEGSKSVKF DFSKSVPQLN TWYGHNNCNT TGRPSSPDLP PPHFPPEFPP ETPTTPPPPP 180
  181 PRPSAASRLG NGESVFLAFA IATAIAAMVR WSY

Type	Start	End	Confidence
Signal Peptide	1	21	0.97
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	191	0.97
Transmembrane Helix	192	211	0.58
Cytoplasmic	212	213	0.54