YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AAP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.94
Transmembrane Helix	43	64	0.89
Non-Cytoplasmic	65	68	0.66
Transmembrane Helix	69	88	0.86
Cytoplasmic	89	128	0.83
Transmembrane Helix	129	150	0.61
Non-Cytoplasmic	151	169	0.54
Transmembrane Helix	170	186	0.67
Cytoplasmic	187	193	0.49
Transmembrane Helix	194	220	0.82
Non-Cytoplasmic	221	246	0.59
Transmembrane Helix	247	264	0.58
Cytoplasmic	265	284	0.86
Transmembrane Helix	285	306	0.96
Non-Cytoplasmic	307	323	0.94
Transmembrane Helix	324	346	0.90
Cytoplasmic	347	387	0.96
Transmembrane Helix	388	408	0.83
Non-Cytoplasmic	409	409	0.47
Transmembrane Helix	410	434	0.64
Cytoplasmic	435	449	0.56
Transmembrane Helix	450	472	0.90
Non-Cytoplasmic	473	485	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSFNTEGHN HSTAESGDAY TVSDPTKNVD EDGREKRTGT WLTASAHIIT AVIGSGVLSL  60
   61 AWAIAQLGWI AGTSILLIFS FITYFTSTML ADCYRAPDPV TGKRNYTYMD VVRSYLGGRK 120
  121 VQLCGVAQYG NLIGVTVGYT ITASISLVAV GKSNCFHDKG HTADCTISNY PYMAVFGIIQ 180
  181 VILSQIPNFH KLSFLSIMAA VMSFTYATIG IGLAIATVAG GKVGKTSMTG TAVGVDVTAA 240
  241 QKIWRSFQAV GDIAFAYAYA TVLIEIQDTL RSSPAENKAM KRASLVGVST TTFFYILCGC 300
  301 IGYAAFGNNA PGDFLTDFGF FEPFWLIDFA NACIAVHLIG AYQVFAQPIF QFVEKKCNRN 360
  361 YPDNKFITSE YSVNVPFLGK FNISLFRLVW RTAYVVITTV VAMIFPFFNA ILGLIGAASF 420
  421 WPLTVYFPVE MHIAQTKIKK YSARWIALKT MCYVCLIVSL LAAAGSIAGL ISSVKTYKPF 480
  481 RTMHE