YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20197292, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLDSIDAI LFSLSRAFTS PFAVFVQIQG CTICLLLALG WLLAEYVRNR EVKRIKNSIK  60
   61 AGNSLAFLYQ DINELEHSRQ VKLPRVSVVM PLKGFGEHNL HNWRSQITSL YGGPLEFLFV 120
  121 VESTEDPAYH AVSRLLSMYQ DHVEAKVVVA GLSTTCSQKI HNQLIGVEKM HKDTKYVLFL 180
  181 DDDVRLHPGT IGALTTEMEK NPEIFIQTGY PLDLPSGTLG SYCIYEYHMP CSMGFATGGR 240
  241 TFFLWGGCMM MHADDFRQDR YGVVSGLRDG GYSDDMTLAS LAGAHKRLIT SPPVAVFPHP 300
  301 LASDLSFGRY WNYLRKQTFV LESYISKVNW IMNKALFAVH CYLSWGFVAP YVMAIIHITS 360
  361 ALRIYIKGYH QLEDTTSASG MMLVITLAIC TFIELLSMWN LTRREVQLCN MLSPEAPRLS 420
  421 LATYNWGLVF VAMLVDNFLY PISAFRSHFS QSINWSGIRY HLKDGKIFKI ERRKDMGPTK 480
  481 TDLGGKHLYG KKGAPQKASF LSSLGRNLAH WRQPKKFDV

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.91
Transmembrane Helix	21	44	0.89
Cytoplasmic	45	335	0.94
Transmembrane Helix	336	359	0.85
Non-Cytoplasmic	360	377	0.85
Transmembrane Helix	378	401	0.89
Cytoplasmic	402	421	0.91
Transmembrane Helix	422	442	0.91
Non-Cytoplasmic	443	519	0.92