YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15220596, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSAITFPL IFTLLTFIDV SSSASIVFNV VSFGAKPDGV TDSTAAFLKA WQGACGSAAS  60
   61 ATVVVPTGTF LLKVITFGGP CKSKITFQVT GTVVAPEDYR TFGNSGSWIL FNKVNRFSLV 120
  121 GGTFDARGSG FWSCRKSGQN CPPGVRSISF NSAKDVIISG VKSMNSQVSH MTLNGCTNVA 180
  181 VRNIRLVAPG DSPNTDGFTV QFSTGVTLTG STVQTGDDCV AIGQGTRNFL ISKLACGPGH 240
  241 GVSIGSLAKQ LNEDGVENVT VSSSVFTGSQ NGVRIKSWAR PSTGFVRNVF FQNLIMRNVQ 300
  301 NPIIIDQNYC PSNQGCPTEH SGVKITQVTY KNIQGTSATQ EAMKLVCSKS NPCTGITLQD 360
  361 IKLTYNKGTP ATSLCFNAVG KNLGVIQPTS CLNR

Type	Start	End	Confidence
Signal Peptide	1	24	0.95
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	394	0.98