YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11358482, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.88
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVFKTLAFL FVLSIVIYQS VAVTDVNSSF SFNGFVKAPS FDNNVALFGD SKLVHGGPSI  60
   61 QLTDSVSRSE GRVIYKKPIR LFQGKERNFS GSFSTSFSFS MSDEIGSVLA FIMVPRGLDL 120
  121 RLFGRKGNNS SSGLGFLLKH KVVAVEFGIS KRGNHVGILV GRPESGKVRK LSSFGHHFNE 180
  181 EKRLNCWIDY EASSKRIEVR LSLSAALKPV DPFVSYSVDL AKLWKDGKFM VGLTSANGNT 240
  241 SKPVYLHSWS FKLRHPSMRI HSQPLDPNDV SKTVKEGEKT VEVKGKGKCI WRILGALVLG 300
  301 AVCGTLGAMF ALYLWTICGN RQSMAIVPEE CADEKADILV TKADVVVEEE VKK

Type	Start	End	Confidence
Signal Peptide	1	22	0.93
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	292	0.71
Transmembrane Helix	293	317	0.84
Cytoplasmic	318	353	0.55