YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LHCA3_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS  60
   61 QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE IINGRFAMLG AAGAIAPEIL 120
  121 GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM 180
  181 GKQYFLGLEK GLAGSGNPAY PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF 240
  241 IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Type	Start	End	Confidence
Signal Peptide	1	17	0.83
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	273	0.86