YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR39_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.75
Transmembrane Helix	24	46	0.85
Non-Cytoplasmic	47	60	0.61
Transmembrane Helix	61	84	0.84
Cytoplasmic	85	91	0.56
Transmembrane Helix	92	115	0.86
Non-Cytoplasmic	116	137	0.72
Transmembrane Helix	138	158	0.75
Cytoplasmic	159	175	0.90
Transmembrane Helix	176	198	0.91
Non-Cytoplasmic	199	205	0.78
Transmembrane Helix	206	225	0.94
Cytoplasmic	226	328	0.97
Transmembrane Helix	329	351	0.89
Non-Cytoplasmic	352	365	0.91
Transmembrane Helix	366	389	0.89
Cytoplasmic	390	405	0.86
Transmembrane Helix	406	423	0.85
Non-Cytoplasmic	424	438	0.72
Transmembrane Helix	439	459	0.87
Cytoplasmic	460	475	0.76
Transmembrane Helix	476	498	0.89
Non-Cytoplasmic	499	516	0.87
Transmembrane Helix	517	539	0.90
Cytoplasmic	540	558	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLVSGDKE AQISGDPGSK RGGWITFPFM LATLLGLSVT SFGWVMNLIV FLIEEFNIKS  60
   61 IAAAQISNVA NGCLSMLPVV AAILADSFFG NIPVIAASSF ISLLGIVLLT LIASLDYLRP 120
  121 RPCEAGSVLC TPPSKLHLGI LYTALALVTT GAGGTRFTMA SAGANQYEKP KEQGSFFNWY 180
  181 FLTLYAGAIT GATAIVYIQD NASWKLGFGL CAAANLISFI VFVSGKRYYK HDKPMGSPFT 240
  241 SLIRVVVSAT VKRKAVISCN EEDYHHYGLE KEVKTSAAMP SKSFRFLNRA ALMTKDDLNQ 300
  301 KEGSVNNIWR LCSVQEVEDF KAILRVFPLW LSIIFVSTPM VMQTSLIVLQ ALVTDRGLGP 360
  361 NFKVPAGSLQ VIIIITACIV IIMNNWLVFP MYKKLTHKLL TPLQKVGIGQ VLTILSMALS 420
  421 AVVEAKRLKT VENGHPMSVL WLFPPLVIVG IGEAFQFPAN IELFYGEFPE SLRNTATSLT 480
  481 SVVIGISFYL STALIDLIQR TTAWLPNDIN HGRVDNVYWL LVIGGILNFG YFLVCSWVYK 540
  541 YRNLKDNDQE QDPKDGTM