YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15242148, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSPRSEGR KFIIPSFFFI IALCVLAFIN EIRFDSLLSF GRCALSNVPM NNGSSETPLL  60
   61 SSSPVDDEIR ILIGILTLPD QYSRRHFLRM IYGTQNVPDG VKVDVKFVFC NLTKEDQKVL 120
  121 VALEIMRYDD IIILNCNENM NKGKTYTYFS SLPDIFNETD AQKPPYHYVM KADDDTYIRL 180
  181 ESLVASLRPL PREDLYYGYV IPCPSMDPFV HYMSGMGYLV SWDIAVWLKD SEIPKKHLEG 240
  241 PEDKVFGDWI REGRRGKNRF NAKWSMYNFP EPPTRCTHEL WPDTIAVHLL KNQEKWIRTL 300
  301 NYFNVTSNLK PSKLYHIP

Type	Start	End	Confidence
Cytoplasmic	1	11	0.85
Transmembrane Helix	12	30	0.88
Non-Cytoplasmic	31	318	0.99