YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR26_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	113	0.85
Transmembrane Helix	114	135	0.85
Non-Cytoplasmic	136	157	0.62
Transmembrane Helix	158	179	0.63
Cytoplasmic	180	201	0.91
Transmembrane Helix	202	223	0.94
Non-Cytoplasmic	224	230	0.88
Transmembrane Helix	231	254	0.88
Cytoplasmic	255	313	0.96
Transmembrane Helix	314	332	0.89
Non-Cytoplasmic	333	353	0.83
Transmembrane Helix	354	375	0.85
Cytoplasmic	376	394	0.90
Transmembrane Helix	395	415	0.90
Non-Cytoplasmic	416	439	0.89
Transmembrane Helix	440	461	0.87
Cytoplasmic	462	474	0.90
Transmembrane Helix	475	498	0.90
Non-Cytoplasmic	499	516	0.95
Transmembrane Helix	517	538	0.94
Cytoplasmic	539	545	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASIDEERSL LEVEESLIQE EVKLYAEDGS IDIHGNPPLK QTTGNWKACP FIFANECCER  60
   61 LAYYGIAKNL ITYFTNELHE TNVSAARHVM TWQGTCYITP LIGALIADAY WGRYWTIACF 120
  121 SAIYFTGMVA LTLSASVPGL KPAECIGSLC PPATMVQSTV LFSGLYLIAL GTGGIKPCVS 180
  181 SFGADQFDKT DPSERVRKAS FFNWFYFTIN IGAFVSSTVL VWIQENYGWE LGFLIPTVFM 240
  241 GLATMSFFFG TPLYRFQKPR GSPITSVCQV LVAAYRKSNL KVPEDSTDEG DANTNPWKLC 300
  301 TVTQVEEVKI LLRLVPIWAS GIIFSVLHSQ IYTLFVQQGR CMKRTIGLFE IPPATLGMFD 360
  361 TASVLISVPI YDRVIVPLVR RFTGLAKGFT ELQRMGIGLF VSVLSLTFAA IVETVRLQLA 420
  421 RDLDLVESGD IVPLNIFWQI PQYFLMGTAG VFFFVGRIEF FYEQSPDSMR SLCSAWALLT 480
  481 TTLGNYLSSL IITLVAYLSG KDCWIPSDNI NNGHLDYFFW LLVSLGSVNI PVFVFFSVKY 540
  541 THMKV