YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18397766, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPTTSRSRS SSSSSRANPM FLQYFRRIVK WQQMDVEYTF WQMLNLCTSP KVVYQHTKYH  60
   61 KQTKNQWARD DPAFIVICSL LLVVATVAYC VTYDHSSSHA VVVVVSVLFT HFLITGAVIA 120
  121 TCCWFLTNSY LREETPNSHV VEQRVEWLYT FDVHCNSFFP MFVLLYVVHY FLSPLLIAHG 180
  181 FIPLLLSNLL FMVGASYYHY LNFLGYDVLP FLERTTFFLY PIGVVIVLSP ILILSGFNPS 240
  241 RYFMNMYFSQ RL

Type	Start	End	Confidence
Cytoplasmic	1	72	0.94
Transmembrane Helix	73	93	0.93
Non-Cytoplasmic	94	106	0.71
Transmembrane Helix	107	127	0.93
Cytoplasmic	128	147	0.88
Transmembrane Helix	148	170	0.79
Non-Cytoplasmic	171	176	0.64
Transmembrane Helix	177	201	0.84
Cytoplasmic	202	216	0.74
Transmembrane Helix	217	237	0.95
Non-Cytoplasmic	238	252	0.78