YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP16_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.99
Transmembrane Helix	28	50	0.92
Non-Cytoplasmic	51	74	0.86
Transmembrane Helix	75	93	0.94
Cytoplasmic	94	108	0.91
Transmembrane Helix	109	131	0.87
Non-Cytoplasmic	132	136	0.82
Transmembrane Helix	137	158	0.92
Cytoplasmic	159	165	0.86
Transmembrane Helix	166	186	0.94
Non-Cytoplasmic	187	200	0.90
Transmembrane Helix	201	223	0.92
Cytoplasmic	224	241	0.93
Transmembrane Helix	242	264	0.90
Non-Cytoplasmic	265	283	0.93
Transmembrane Helix	284	309	0.81
Cytoplasmic	310	315	0.64
Transmembrane Helix	316	336	0.89
Non-Cytoplasmic	337	343	0.79
Transmembrane Helix	344	362	0.92
Cytoplasmic	363	383	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEFQGPEPR GQMMSENPRS LELNQRKWWI SVFICGFLIF AGDSLVMLLL NFFYVQDNRS  60
   61 ESDQDRQYKG TWTQALIQNA AFPILIPFFF ILSSPKPNPE TVSNQTNNGW FRVLSLYVSL 120
  121 GVLVSVYSKL YALGKLYVGW GILLSTQLIL TSLFSAFINR LKFNRWIIIS IIFTLGADFF 180
  181 GGPAFAGTPN EDETDPYDIK AWLILIFPTL AFSLSLCLMQ LGFDKVLVKT KRYGNKKVFR 240
  241 MVLEMQICVS FIATLICTVG LFASGEFKEL KGDSERFKKG KTYYILSLVG LALSWQVWAV 300
  301 GLLGLVLLVS GLFADVVHMG ASPVVALLVV LAFDFMDDEF GWQRRGALLG AVLALASYFY 360
  361 SLHTKKKKEI AELNKRENNN SEA