YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RTM2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARQQQKGT GFGVQYEDFV PKSEWKDQPE ATILNIDLTG FAKEQMKVTY VHSSKMIRVT  60
   61 GERPLANRKW SRFNEVFTVP QNCLVDKIHG SFKNNVLTIT MPKETITKVA YLPETSRTEA 120
  121 AALEKAAKLE EKRLLEESRR KEKEEEEAKQ MKKQLLEEKE ALIRKLQEEA KAKEEAEMRK 180
  181 LQEEAKAKEE AAAKKLQEEI EAKEKLEERK LEERRLEERK LEDMKLAEEA KLKKIQERKS 240
  241 VDESGEKEKI LKPEVVYTKS GHVATPKPES GSGLKSGFGG VGEVVKSAEE KLGNLVEKEK 300
  301 KMGKGIMEKI RRKEITSEEK KLMMNVGVAA LVIFALGAYV SYTFCSSSSS SSSSSPSSSS 360
  361 SSTKPE

Type	Start	End	Confidence
Cytoplasmic	1	321	0.92
Transmembrane Helix	322	343	0.92
Non-Cytoplasmic	344	366	0.90