YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEX13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQPAGGSP PKPWEKEGNT SGPNPFRPPS NTSTAGSVEA SGTANPGEVV PPPVNRPNTA  60
   61 ANMNSLSRPV PARPWEQQNY GSTMGGGYGS NLGMTSGYGS GTYGSALGGY GSSYGGGMYG 120
  121 GSSMYRGGYG GGGLYGSSGM YGGGAMGGYG GTMGGYGMGM GTGMGMGMGM GMGGPYGSQD 180
  181 PNDPFNQPPS PPGFWISFLR VMQGAVNFFG RVAMLIDQNT QAFHMFMSAL LQLFDRGGML 240
  241 YGELARFVLR MLGVRTRPRK MQQPPQGPNG LPLPHQPHGN QNYLEGPKTA APGGGGGWDN 300
  301 VWGN

Type	Start	End	Confidence
Cytoplasmic	1	91	0.90
Transmembrane Helix	92	111	0.59
Non-Cytoplasmic	112	126	0.53
Transmembrane Helix	127	150	0.65
Cytoplasmic	151	152	0.42
Transmembrane Helix	153	176	0.75
Non-Cytoplasmic	177	193	0.62
Transmembrane Helix	194	215	0.67
Cytoplasmic	216	304	0.71