YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6437544
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.45
Transmembrane Helix	35	57	0.75
Cytoplasmic	58	67	0.56
Transmembrane Helix	68	98	0.68
Non-Cytoplasmic	99	124	0.63
Transmembrane Helix	125	149	0.86
Cytoplasmic	150	155	0.68
Transmembrane Helix	156	178	0.81
Non-Cytoplasmic	179	196	0.83
Transmembrane Helix	197	218	0.93
Cytoplasmic	219	235	0.81
Transmembrane Helix	236	257	0.77
Non-Cytoplasmic	258	294	0.68
Transmembrane Helix	295	316	0.93
Cytoplasmic	317	336	0.64
Transmembrane Helix	337	359	0.85
Non-Cytoplasmic	360	469	0.59
Transmembrane Helix	470	487	0.66
Cytoplasmic	488	493	0.40
Transmembrane Helix	494	512	0.34
Non-Cytoplasmic	513	553	0.53
Transmembrane Helix	554	581	0.82
Cytoplasmic	582	736	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEAESFVPF QGIKKDVKGR LNCYKQDWIS GLRAGFRILA PTTYIFFASA IPVITFGEQL  60
   61 ERDTDGKITA VQTLVSTALC GVIHSIIGGQ PLLILGVAEP TVIMYTFMFN FAKSRTDLGS 120
  121 NLFLAWTGWV CLWTGLLLFL LAVLGACTFI NRFTRLAGEL FGILIAMLFM QEAIRGIVDE 180
  181 FGVPGRTNPR SAEFQPAWVF ANGMFGLVLS SGLLYTGLKS RKARSWRFGA EWLRGFIADY 240
  241 GVPVMVVVWT CISYIPWKSV PQGIPRRLVS PNPWSPGAYQ NWTCMMNKLQ EMVDVPVLYI 300
  301 LLAVVPASMI AVLYYFDHSV ASQLAQQEDF NLRKPPAYHY DLFLLGFLTI LCGLIGIPPS 360
  361 NGVIPQSPMH TKSLATLNHQ LLRNKLVAAA RKCIRNNATI GEVYGSMEEA YQQMQSPLIH 420
  421 QEPSRIQGLK QSHIQKASNA DALVDETVFD IETEVENILP VEVKEQRVSN FLQAMMVAGC 480
  481 VAAMPLIKRI PSSVLWGYFA YMAIESLPGN QFWERIVLLF TAPSRRFKVL EDNHAVFIET 540
  541 VPFKTMAMFT LFQTAYLLVC FGITWVPVAG VLFPLMIMFL VPVRQYVLPN FFKGAHLQDL 600
  601 DAAEYEEAPA ILSFNLKPEG EVSRATSFAD SGEVMDGMFT RSRGEIRKVS SLKLGGGGSG 660
  661 STVGSPAGGG VELMRRVVSF QNPRVSEKVY IRSLSDFRGG GEISPRSSAG RAPFSPRSAT 720
  721 GGGGGEQRLS NLGKSV