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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: IKU2_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.91
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLLFIVRL LFLMPLASSR SNHSEEVENL LKLKSTFGET KSDDVFKTWT HRNSACEFAG  60
   61 IVCNSDGNVV EINLGSRSLI NRDDDGRFTD LPFDSICDLK LLEKLVLGNN SLRGQIGTNL 120
  121 GKCNRLRYLD LGINNFSGEF PAIDSLQLLE FLSLNASGIS GIFPWSSLKD LKRLSFLSVG 180
  181 DNRFGSHPFP REILNLTALQ WVYLSNSSIT GKIPEGIKNL VRLQNLELSD NQISGEIPKE 240
  241 IVQLKNLRQL EIYSNDLTGK LPLGFRNLTN LRNFDASNNS LEGDLSELRF LKNLVSLGMF 300
  301 ENRLTGEIPK EFGDFKSLAA LSLYRNQLTG KLPRRLGSWT AFKYIDVSEN FLEGQIPPYM 360
  361 CKKGVMTHLL MLQNRFTGQF PESYAKCKTL IRLRVSNNSL SGMIPSGIWG LPNLQFLDLA 420
  421 SNYFEGNLTG DIGNAKSLGS LDLSNNRFSG SLPFQISGAN SLVSVNLRMN KFSGIVPESF 480
  481 GKLKELSSLI LDQNNLSGAI PKSLGLCTSL VDLNFAGNSL SEEIPESLGS LKLLNSLNLS 540
  541 GNKLSGMIPV GLSALKLSLL DLSNNQLTGS VPESLVSGSF EGNSGLCSSK IRYLRPCPLG 600
  601 KPHSQGKRKH LSKVDMCFIV AAILALFFLF SYVIFKIRRD KLNKTVQKKN DWQVSSFRLL 660
  661 NFNEMEIIDE IKSENIIGRG GQGNVYKVSL RSGETLAVKH IWCPESSHES FRSSTAMLSD 720
  721 GNNRSNNGEF EAEVATLSNI KHINVVKLFC SITCEDSKLL VYEYMPNGSL WEQLHERRGE 780
  781 QEIGWRVRQA LALGAAKGLE YLHHGLDRPV IHRDVKSSNI LLDEEWRPRI ADFGLAKIIQ 840
  841 ADSVQRDFSA PLVKGTLGYI APEYAYTTKV NEKSDVYSFG VVLMELVTGK KPLETDFGEN 900
  901 NDIVMWVWSV SKETNREMMM KLIDTSIEDE YKEDALKVLT IALLCTDKSP QARPFMKSVV 960
  961 SMLEKIEPSY NKNSGEASYG ESANDEITKV V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle