YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RIR2C_ARATH
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSMPEEPLL TPTPDRFCMF PIHYPQIWEM YKKAEASFWT AEEVDLSQDN RDWENSLNDG  60
   61 ERHFIKHVLA FFAASDGIVL ENLASRFMSD VQVSEARAFY GFQIAIENIH SEMYSLLLDT 120
  121 YIKDNKERDH LFRAIETIPC VAKKAQWAMK WIDGSQTFAE RIIAFACVEG IFFSGSFCSI 180
  181 FWLKKRGLMP GLTFSNELIS RDEGLHCDFA CLLYTLLKTK LSEERVKSIV CDAVEIEREF 240
  241 VCDALPCALV GMNRDLMSQY IEFVADRLLG ALGYGKVYGV TNPFDWMELI SLQGKTNFFE 300
  301 KRVGDYQKAS VMSSVNGNGA FDNHVFSLDE DF

Type	Start	End	Confidence
Non-Cytoplasmic	1	161	0.77
Transmembrane Helix	162	183	0.67
Cytoplasmic	184	332	0.54