YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPAT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIPAALVFI PVGVLFLISG LIVNIIQLVF FIIVRPFSRS LYRRINKNVA ELLWLQLIWL  60
   61 FDWWACIKIN LYVDAETLEL IGKEHALVLS NHRSDIDWLI GWVMAQRVGC LGSSLAIMKK 120
  121 EAKYLPIIGW SMWFSDYIFL ERSWAKDENT LKAGFKRLED FPMTFWLALF VEGTRFTQEK 180
  181 LEAAQEYASI RSLPSPRNVL IPRTKGFVSA VSEIRSFVPA IYDCTLTVHN NQPTPTLLRM 240
  241 FSGQSSEINL QMRRHKMSEL PETDDGIAQW CQDLFITKDA QLEKYFTKDV FSDLEVHQIN 300
  301 RPIKPLIVVI IWLGFLVFGG FKLLQWLSIV ASWKIILLFV FFLVIATITM QILIQSSESQ 360
  361 RSTPAKRPLQ EQLISA

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.60
Transmembrane Helix	8	34	0.85
Cytoplasmic	35	51	0.57
Transmembrane Helix	52	67	0.40
Non-Cytoplasmic	68	97	0.69
Transmembrane Helix	98	117	0.36
Cytoplasmic	118	305	0.61
Transmembrane Helix	306	326	0.90
Non-Cytoplasmic	327	332	0.47
Transmembrane Helix	333	354	0.92
Cytoplasmic	355	376	0.60