YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PT310_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.98
Transmembrane Helix	56	75	0.92
Non-Cytoplasmic	76	88	0.75
Transmembrane Helix	89	113	0.86
Cytoplasmic	114	123	0.90
Transmembrane Helix	124	145	0.91
Non-Cytoplasmic	146	151	0.75
Transmembrane Helix	152	171	0.92
Cytoplasmic	172	176	0.87
Transmembrane Helix	177	196	0.92
Non-Cytoplasmic	197	200	0.81
Transmembrane Helix	201	220	0.88
Cytoplasmic	221	238	0.81
Transmembrane Helix	239	257	0.97
Non-Cytoplasmic	258	274	0.90
Transmembrane Helix	275	297	0.89
Cytoplasmic	298	303	0.85
Transmembrane Helix	304	325	0.86
Non-Cytoplasmic	326	329	0.79
Transmembrane Helix	330	348	0.91
Cytoplasmic	349	355	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHARGKEL IPLLSFSHQK KQPNLSISST TKMNKKNPDQ KSDMSSSSSS PKKQTLFISS  60
   61 LIILWYTSNI GVLLLNKFLL SNYGFKFPIF LTMCHMSACA ILSYVSIVFL KLVPLQYLKS 120
  121 RSQFLKVATL SIVFCASVVG GNISLRYLPV SFNQAVGATT PFFTALFAYI MTFKREAWVT 180
  181 YGALVPVVTG VVIASGGEPG FHWFGFIMCI SATAARAFKS VLQGILLSSE GERLNSMNLM 240
  241 LYMSPIAVIA LLPVTIFMEP DVMSVTLTLG RQHKYMYILL LVNSVMAYSA NLLNFLVTKH 300
  301 TSALTLQVLG NAKGAVAVVI SILLFRNPVT VMGIGGYSIT VLGVVAYGET KRRFR