YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PPA19_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLNHLTLVC SAIALLSIFV VSQAGVTSTH VRVSEPSEEM PLETFPPPAC YNAPEQVHIT  60
   61 QGDHAGRGMI ISWVTPLNED GSNVVTYWIA NSDGSDNKSA LATTSSYRYF NYTSGYLYHA 120
  121 TIKGLETLYN YMSNPKGQAV LFAGDLSYAD DHPNHDQRKW DSYGRFVEPS AAYQPWIWAA 180
  181 GNHEIDYAES IPHKVHLHFG TKSNELQLTS SYSPLTQLMD ELKKVNRSET PWLIVLVHAP 240
  241 WYNSNNYHYM EGESMRVTFE PWFVENKVDI VFAGHVHAYE RSERISNIQY NITDGMSTPV 300
  301 KDQNAPVYIT IGDGGNIEGI ANNFIDPQPS YSAFREASFG HAILEIKNRT HAHYTWHRNK 360
  361 EDEFIPEAVI ADSIWLKNRY YLREEETS

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	388	0.99