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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|9954728, gi|2...
Protein type: Transmembrane
Type Confidence: 0.58
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKVSPSGE LLNRWRRIEE DEEENDDSDP SAVRRLNQRK EQWFTDAFTL LISLPKDTHI  60
   61 WCGHGDIMGP LIETFYNYFK DDRVDSPLKV LWKRISEEMR LCAQCICQHH QTQEMYEKEY 120
  121 ECSSVGPLLV VLRKLDEERV TRHLQEINLK IEKGTYDPDH HHAEVVSVMY EVLMFPFFFD 180
  181 DMSLCTEFEK FIESIDNIHE LAFAENQEFP VSNPVRAPPA IAQEIHWNSG DGGTAFRVSG 240
  241 TETKDISRPL IYMAWDDITV RVKGPAFEEG ILEPYPIFVD TVLNHISGDS PEFSLAVNCL 300
  301 KELFKTLGMS LEALRDDSSL HISLRQPAID LVQAILVSDA TALLASLLRN NTGKFMGYEI 360
  361 QYDDDDSNLP FSHTTEDVSD RSWSDFTQQS KITLGECKEW MCIPMLWITT LTNTNFLNLP 420
  421 VSLSQAVFWS RSRFCLVESE KNDEMTVDIE TWLSSSAVEI KGTLGWKVAT GSDDGGPGKE 480
  481 SKNSVTVSKM CLTLIRTLKR LTTCYLVQIG DECRKQWTWV PEMGETFILS LSDPDDNVRQ 540
  541 FGKSMLEHVS NTRGLSCGLK FLCSQTSHLL FVSSGVRHVL QQLLKEEEVA ITDVVKSSAG 600
  601 GFLRQPNFNA LPMTCVRLLE ILPVVLGKLR VSREESCDTR GTLKDASDLK WLPDLIDWGR 660
  661 SQLKVVVAYW KRALVALLDI LQGSNSDACS SAVQAIRHVL SSGDTIDNAL TLLNSDDVDI 720
  721 EQLAEQISRL VPKANEYQIL KPVDVVGKLQ DNMMDLTVDE TEKESLKNLP SLHKSHQPDI 780
  781 NKTLLPIKNI SQISSLKKST SSIDASKLSA LVLSERDVTV SSSNIVRDLP TTNAEPSKAA 840
  841 GMSREAEKRQ NVEDPVSSGI RPNLKKATDE LGPRGTSKEA QKSAISNAKG MDLRKVVNET 900
  901 EVDPLDLALK SLKRQSLPLA KSGPIVPKRQ VIQLCAPVNK KSDRWQRQEA GFKRFRPPKL 960
  961 EDWFRKILQM DYYAIVGLAS TKKDESQNVG KFREVPVRFG SPEQYIQIFQ PLVLEEFKAQ1020
 1021 LQSSFQEISS LEEIYYGVIS VLSIERVDDF HFVRFMQDEN DGSNSKSFSE NDLVLFTKEH1080
 1081 PENSNVGVNM MGKVEGREWD DKKRTSILNV RLYLQNASSR LNQARRNLLE RSQWHASRIL1140
 1141 NITSQIREFQ ALSCIKDIPV LPLILSPMND SNYDSEVKRS DLRSLPHSLQ QILKSSFNES1200
 1201 QLQAISVAIG SSNLMKAFDI SLIQGPPGTG KTRTIVAIIS GLLASASHKT SDRGNSEPGH1260
 1261 SSSTSRQGMN PSVAVARAWQ DAALAKQLND NSETNRKIAE KNGRGRVLIC AQSNAAVDEL1320
 1321 VSRISSLGIY GRDGKMFKPY LVRVGNAKTV HSNSMPFFLD TLVDQRLAEE RMRINESKSN1380
 1381 KGADSSALLR SNLEKVVDQI THFEAKRANI NQESLDAKDK PENEHHNKDD DGKLMSDAEL1440
 1441 GIRLRRLYEQ KRKIYKDLSA VQAQERKANY EMRTLKQKLR KSILKEAQIV VTTLSGCGGD1500
 1501 LYSVCAESLA AHKFGSPSED NLFDAVVIDE AAQALEPATL IPLQLLKSRG TKCIMVGDPK1560
 1561 QLPATVLSNV ASKFLYECSM FERLQRAGYP ILMLTQQYRM HPEICRFPSM HFYDNKLLNG1620
 1621 VDMSSKSAPF HENHHLGPYV FYDIVDGQEH RSGDSSSVCN EQEAEAAVQL LRFFKKRYPS1680
 1681 EFVAGRIGII TPYKRQLAVL RSRFTGAFGA QVTADMEMNT VDGFQGKEVD ILVLSTVRAT1740
 1741 HSAPDGVNQS RIGFVADVRR MNVALTRAKL SLWVLGNTRT LQRDHNWGAL VKDAKEREVI1800
 1801 IPVKRPYNYM FGENVMEQNH SENLPKNFPK PDKQHSRRKE QRAETSSDRK LRKTDGDVVP1860
 1861 ISSKGSESKH TRRNAKEEAS SQREKLVASC EKVTSEETLR RSHEKKEKMK GREKSSNPEI1920
 1921 TDANSSKNEN SNEWKKSKKA SSKLDSSKRA NPTDKIGQQD RQINKGNASN QGGVEDMISK1980
 1981 RKQQREAVAA ILNSSLIPSH KPKPPKRPLS PGSTAGSHTR PPKAIKGKIS LHIEPLYVLP2040
 2041 QKLICNCKLS QPRTTVNKDN KQTTDFTKVI SHNREPVVNF RFHGFASTTA SLPLMASIFL2100
 2101 ASVTSLSLLE AFLEDETTRT SAFCKSSMTF IEASAGSSPR FW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle