YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25309854, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.92
Transmembrane Helix	29	48	0.93
Non-Cytoplasmic	49	73	0.87
Transmembrane Helix	74	95	0.92
Cytoplasmic	96	125	0.92
Transmembrane Helix	126	149	0.90
Non-Cytoplasmic	150	178	0.93
Transmembrane Helix	179	199	0.92
Cytoplasmic	200	219	0.85
Transmembrane Helix	220	241	0.96
Non-Cytoplasmic	242	257	0.87
Transmembrane Helix	258	278	0.87
Cytoplasmic	279	289	0.79
Transmembrane Helix	290	323	0.77
Non-Cytoplasmic	324	442	0.56
Transmembrane Helix	443	459	0.44
Cytoplasmic	460	554	0.87
Transmembrane Helix	555	577	0.94
Non-Cytoplasmic	578	597	0.80
Transmembrane Helix	598	619	0.94
Cytoplasmic	620	703	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIEKSNNGG SNPSAGEEFK DMIKGVTKFL MMVIFLGTIM LWIMMPTLTY RTKWLPHLRI  60
   61 KFGTSTYFGA TGTTLFMYMF PMMVVACLGC VYLHFKNRKS PHHIDRETKG GVWSKLRKPM 120
  121 LVKGPLGIVS VTEITFLAMF VALLLWCFIT YLRNSFATIT PKSAAAHDES LWQAKLESAA 180
  181 LRLGLIGNIC LAFLFLPVAR GSSLLPAMGL TSESSIKYHI WLGHMVMALF TVHGLCYIIY 240
  241 WASMHEISQM IMWDTKGVSN LAGEIALAAG LVMWATTYPK IRRRFFEVFF YTHYLYIVFM 300
  301 LFFVLHVGIS FSFIALPGFY IFLVDRFLRF LQSRENVRLL AARILPSDTM ELTFSKNSKL 360
  361 VYSPTSIMFV NIPSISKLQW HPFTITSSSK LEPEKLSIVI KKEGKWSTKL HQRLSSSDQI 420
  421 DRLAVSVEGP YGPASADFLR HEALVMVCGG SGITPFISVI RDLIATSQKE TCKIPKITLI 480
  481 CAFKKSSEIS MLDLVLPLSG LETELSSDIN IKIEAFITRD NDAGDEAKAG KIKTLWFKPS 540
  541 LSDQSISSIL GPNSWLWLGA ILASSFLIFM IIIGIITRYY IYPIDHNTNK IYSLTSKTII 600
  601 YILVISVSIM ATCSAAMLWN KKKYGKVESK QVQNVDRPSP TSSPTSSWGY NSLREIEKLL 660
  661 LDVEGSSVGV LVCGPKKMRQ KVAEICSSGL AENLHFESIS FSW