YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SMT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.21
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLTLFFTG ALVAVGIYWF LCVLGPAERK GKRAVDLSGG SISAEKVQDN YKQYWSFFRR  60
   61 PKEIETAEKV PDFVDTFYNL VTDIYEWGWG QSFHFSPSIP GKSHKDATRL HEEMAVDLIQ 120
  121 VKPGQKILDV GCGVGGPMRA IASHSRANVV GITINEYQVN RARLHNKKAG LDALCEVVCG 180
  181 NFLQMPFDDN SFDGAYSIEA TCHAPKLEEV YAEIYRVLKP GSMYVSYEWV TTEKFKAEDD 240
  241 EHVEVIQGIE RGDALPGLRA YVDIAETAKK VGFEIVKEKD LASPPAEPWW TRLKMGRLAY 300
  301 WRNHIVVQIL SAVGVAPKGT VDVHEMLFKT ADYLTRGGET GIFSPMHMIL CRKPESPEES 360
  361 S

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.56
Transmembrane Helix	6	25	0.64
Cytoplasmic	26	299	0.59
Transmembrane Helix	300	316	0.21
Non-Cytoplasmic	317	361	0.59