YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25347301, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTQQELPAC KPILTPRWVI LTFLVAGVVF IPLGVICLFA SQGLRFCGFI EDMFHSYLKV  60
   61 VEIVDRYDTD CIPTSSRNNM VAYIQGEGDK ICKRTITVTK AMKHPVYVYY QLENFYQNHR 120
  121 RYVKSRNDAQ LRSPKEEHDV KTCAPEDNVG GEPIVPCGLV AWSLFNDTYS FSRNSQQLLV 180
  181 NKKGISWKSD RENKFGKNVF PKNFQKGAPI GGGTLNISKP LSEQEDLIVW MRTAALPTFR 240
  241 KLYGKIETDL HAGDTITVLL QNNYNTYSFN GQKKLVLSTT SWLGGRNDFL GIAYLTVGSI 300
  301 CLFLAVTFAV LYLVKPRQLG DPSYLSWNRS AGGLQ

Type	Start	End	Confidence
Cytoplasmic	1	17	0.72
Transmembrane Helix	18	40	0.90
Non-Cytoplasmic	41	289	0.75
Transmembrane Helix	290	314	0.89
Cytoplasmic	315	335	0.73