YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ICMTA_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEIFSDTSI RQLSQMLLSL IFFHISEYIL AITIHGASNV TLSSLLITKH YALAMLLSLL  60
   61 EYLTEIILFP GLKQHWWVSN FGLIMIIVGE IIRKAAIITA GRSFTHLIKI NYEEHHGLVT 120
  121 HGVYRLMRHP SYCGFLIWSV GTQVMLCNPV SAVAFAVVVW RFFAQRIPYE EYFLNQFFGV 180
  181 QYLEYAESVA SGVPFVN

Type	Start	End	Confidence
Cytoplasmic	1	15	0.80
Transmembrane Helix	16	37	0.85
Non-Cytoplasmic	38	46	0.67
Transmembrane Helix	47	69	0.71
Cytoplasmic	70	75	0.59
Transmembrane Helix	76	97	0.84
Non-Cytoplasmic	98	134	0.64
Transmembrane Helix	135	163	0.77
Cytoplasmic	164	197	0.66