YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25404665, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRNVSAKRS ELCLDSSKIR LDHRWSFIGG SRISVQSNSY TVVHKKFSGV RASWLTTTQI  60
   61 ASSVFAVGTT AVLPFYTLMV VAPKAEITKK CMESSVPYII LGVLYVYLLY ISWTPETLKY 120
  121 MFSSKYMLPE LSGIAKMFSS EMTLASAWIH LLVVDLFAAR QVYNDGLENQ IETRHSVSLC 180
  181 LLFCPVGIVS HFVTKAIINN QYK

Type	Start	End	Confidence
Cytoplasmic	1	54	0.54
Transmembrane Helix	55	80	0.78
Non-Cytoplasmic	81	93	0.41
Transmembrane Helix	94	114	0.88
Cytoplasmic	115	133	0.38
Transmembrane Helix	134	159	0.68
Non-Cytoplasmic	160	174	0.41
Transmembrane Helix	175	194	0.81
Cytoplasmic	195	203	0.42