YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20260048, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSAIQQSS FAGQTALKPS SDLIQKVGVL GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP  60
   61 FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI HSRWAMLGAL GCTFPEILSK 120
  121 NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP 180
  181 LGEGLDPLYP GGAFDPLNLA EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE 240
  241 NLFDHLADPV ANNAWSYATN FVPGK

Type	Start	End	Confidence
Cytoplasmic	1	99	0.66
Transmembrane Helix	100	118	0.47
Non-Cytoplasmic	119	150	0.80
Transmembrane Helix	151	171	0.57
Cytoplasmic	172	218	0.65
Transmembrane Helix	219	234	0.52
Non-Cytoplasmic	235	265	0.74