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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CSLD1_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSPPKKTL NSQSSSLSRP PQAVKFGRRT SSGRIVSLSR DDDMDVSGDY SGQNDYINYT  60
   61 VLMPPTPDNQ PAGSSGSTSE SKGDANRGGG GGDGPKMGNK LERRLSVMKS NNKSMLLRSQ 120
  121 TGDFDHNRWL FESKGKYGIG NAFWSEEDDT YDGGVSKSDF LDKPWKPLTR KVQIPAKILS 180
  181 PYRLLIVIRL VIVFFFLWWR ITNPNEDAMW LWGLSIVCEI WFAFSWILDI LPKLNPINRA 240
  241 TDLAALHDKF EQPSPSNPTG RSDLPGVDVF VSTADPEKEP PLVTANTLLS ILAVDYPIEK 300
  301 LSAYISDDGG AILTFEAMAE AVRFAEYWVP FCRKHDIEPR NPDSYFSIKK DPTKNKKRQD 360
  361 FVKDRRWIKR EYDEFKVRIN GLPEQIKKRA EQFNMREELK EKRIAREKNG GVLPPDGVEV 420
  421 VKATWMADGT HWPGTWFEPK PDHSKGDHAG ILQIMSKVPD LEPVMGGPNE GALDFTGIDI 480
  481 RVPMFAYVSR EKRPGFDHNK KAGAMNGMVR ASAILSNGAF ILNLDCDHYI YNSKAIKEGM 540
  541 CFMMDRGGDR ICYIQFPQRF EGIDPSDRYA NHNTVFFDGN MRALDGLQGP VYVGTGCMFR 600
  601 RYALYGFNPP RANEYSGVFG QEKAPAMHVR TQSQASQTSQ ASDLESDTQP LNDDPDLGLP 660
  661 KKFGNSTMFT DTIPVAEYQG RPLADHMSVK NGRPPGALLL PRPPLDAPTV AEAIAVISCW 720
  721 YEDNTEWGDR IGWIYGSVTE DVVTGYRMHN RGWRSVYCIT KRDAFRGTAP INLTDRLHQV 780
  781 LRWATGSVEI FFSKNNAMFA TRRLKFLQRV AYLNVGIYPF TSIFLVVYCF LPALCLFSGK 840
  841 FIVQSLDIHF LSYLLCITVT LTLISLLEVK WSGIGLEEWW RNEQFWLIGG TSAHLAAVVQ 900
  901 GLLKVIAGIE ISFTLTSKAS GEDEDDIFAD LYIVKWTGLF IMPLTIIIVN LVAIVIGASR 960
  961 TIYSVIPQWG KLMGGIFFSL WVLTHMYPFA KGLMGRRGKV PTIVYVWSGL VSITVSLLWI1020
 1021 TISPPDDVSG SGGISV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle