YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GCR1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVLTAGGG LTAGDRSIIT AINTGASSLS FVGSAFIVLC YCLFKELRKF SFKLVFYLAL  60
   61 SDMLCSFFLI VGDPSKGFIC YAQGYTTHFF CVASFLWTTT IAFTLHRTVV KHKTDVEDLE 120
  121 AMFHLYVWGT SLVVTVIRSF GNNHSHLGPW CWTQTGLKGK AVHFLTFYAP LWGAILYNGF 180
  181 TYFQVIRMLR NARRMAVGMS DRVDQFDNRA ELKVLNRWGY YPLILIGSWA FGTINRIHDF 240
  241 IEPGHKIFWL SVLDVGTAAL MGLFNSIAYG FNSSVRRAIH ERLELFLPER LYRWLPSNFR 300
  301 PKNHLILHQQ QQQRSEMVSL KTEDQQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.96
Transmembrane Helix	19	43	0.90
Cytoplasmic	44	53	0.79
Transmembrane Helix	54	72	0.96
Non-Cytoplasmic	73	84	0.84
Transmembrane Helix	85	106	0.90
Cytoplasmic	107	121	0.89
Transmembrane Helix	122	141	0.94
Non-Cytoplasmic	142	163	0.91
Transmembrane Helix	164	186	0.89
Cytoplasmic	187	217	0.96
Transmembrane Helix	218	238	0.89
Non-Cytoplasmic	239	246	0.89
Transmembrane Helix	247	271	0.84
Cytoplasmic	272	326	0.96