YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHLG_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSILNTVST IHSSRVTSVD RVGVLSLRNS DSVEFTRRRS GFSTLIYESP GRRFVVRAAE  60
   61 TDTDKVKSQT PDKAPAGGSS INQLLGIKGA SQETNKWKIR LQLTKPVTWP PLVWGVVCGA 120
  121 AASGNFHWTP EDVAKSILCM MMSGPCLTGY TQTINDWYDR DIDAINEPYR PIPSGAISEP 180
  181 EVITQVWVLL LGGLGIAGIL DVWAGHTTPT VFYLALGGSL LSYIYSAPPL KLKQNGWVGN 240
  241 FALGASYISL PWWAGQALFG TLTPDVVVLT LLYSIAGLGI AIVNDFKSVE GDRALGLQSL 300
  301 PVAFGTETAK WICVGAIDIT QLSVAGYLLA SGKPYYALAL VALIIPQIVF QFKYFLKDPV 360
  361 KYDVKYQASA QPFLVLGIFV TALASQH

Type	Start	End	Confidence
Cytoplasmic	1	182	0.78
Transmembrane Helix	183	204	0.83
Non-Cytoplasmic	205	209	0.63
Transmembrane Helix	210	227	0.92
Cytoplasmic	228	235	0.81
Transmembrane Helix	236	255	0.90
Non-Cytoplasmic	256	265	0.69
Transmembrane Helix	266	286	0.87
Cytoplasmic	287	307	0.75
Transmembrane Helix	308	329	0.66
Non-Cytoplasmic	330	334	0.73
Transmembrane Helix	335	355	0.88
Cytoplasmic	356	365	0.79
Transmembrane Helix	366	385	0.74
Non-Cytoplasmic	386	387	0.66