YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMT15_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.89
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	50	0.91
Transmembrane Helix	51	72	0.90
Cytoplasmic	73	79	0.89
Transmembrane Helix	80	103	0.85
Non-Cytoplasmic	104	130	0.92
Transmembrane Helix	131	150	0.93
Cytoplasmic	151	157	0.83
Transmembrane Helix	158	179	0.93
Non-Cytoplasmic	180	198	0.95
Transmembrane Helix	199	222	0.88
Cytoplasmic	223	237	0.91
Transmembrane Helix	238	259	0.89
Non-Cytoplasmic	260	283	0.93
Transmembrane Helix	284	305	0.92
Cytoplasmic	306	313	0.81
Transmembrane Helix	314	333	0.92
Non-Cytoplasmic	334	339	0.75
Transmembrane Helix	340	360	0.90
Cytoplasmic	361	370	0.88
Transmembrane Helix	371	390	0.91
Non-Cytoplasmic	391	419	0.90
Transmembrane Helix	420	442	0.94
Cytoplasmic	443	496	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGAITCSAA DLSALLGPNA TAAADYICGQ LGSVNNKFTD AAYAIDNTYL LFSAYLVFAM  60
   61 QLGFAMLCAG SVRAKNTMNI MLTNVLDAAA GGLFYYLFGY AFAFGESSDG FIGRHNFGLQ 120
  121 NFPTLTSDYS FFLYQWAFAI AAAGITSGSI AERTKFVAYL IYSSFLTGFV YPVVSHWFWS 180
  181 PDGWASPFRS EDRLFGTGAI DFAGSGVVHM VGGIAGLWGA LIEGPRIGRF PDGGHAIALR 240
  241 GHSASLVVLG TFLLWFGWYG FNPGSFTKIL IPYNSGSNYG QWSGIGRTAV TTTLSGCTAA 300
  301 LTTLFGKRLL SGHWNVTDVC NGLLGGFAAI TAGCSVVDPW AAIVCGFVAS LVLIGCNKLA 360
  361 ELLKYDDPLE AAQLHGGCGA WGLIFVGLFA KEKYINEVYG ASPGRHYGLF MGGGGKLLGA 420
  421 QLVQIIVIVG WVSATMGTLF FILKKLNLLR ISEQHEMRGM DLAGHGGFAY IYHDNDDDSI 480
  481 GVPGSPVPRA PNPPAV