YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LHTL4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.83
Transmembrane Helix	36	58	0.84
Non-Cytoplasmic	59	63	0.63
Transmembrane Helix	64	83	0.93
Cytoplasmic	84	112	0.75
Transmembrane Helix	113	136	0.69
Non-Cytoplasmic	137	181	0.56
Transmembrane Helix	182	205	0.86
Cytoplasmic	206	224	0.79
Transmembrane Helix	225	243	0.73
Non-Cytoplasmic	244	268	0.60
Transmembrane Helix	269	291	0.88
Cytoplasmic	292	302	0.58
Transmembrane Helix	303	323	0.79
Non-Cytoplasmic	324	326	0.56
Transmembrane Helix	327	346	0.69
Cytoplasmic	347	353	0.88
Transmembrane Helix	354	374	0.90
Non-Cytoplasmic	375	379	0.70
Transmembrane Helix	380	401	0.92
Cytoplasmic	402	410	0.92
Transmembrane Helix	411	433	0.90
Non-Cytoplasmic	434	455	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGIPDHIQD QHLVEEDQPF DLEDWLPITA SRNANWYYSA FHNVTAIVGA GVLGLPYAMS  60
   61 ELGWGPGVVV LILSWVITLY TLWQMIEMHE MFEGQRFDRY HELGQAAFGK KLGLYIIVPL 120
  121 QLLVEISVCI VYMVTGGKSL KNVHDLALGD GDKCTKLRIQ HFILIFASSQ FVLSLLKNFN 180
  181 SISGVSLVAA VMSVSYSTIA WVASLRKGAT TGSVEYGYRK RTTSVPLAFL SALGEMAFAY 240
  241 AGHNVVLEIQ ATIPSTPENP SKRPMWKGAV VAYIIVAFCY FPVALVGFKT FGNSVEESIL 300
  301 ESLTKPTALV IVANMFVVIH LLGSYQVYAM PVFDMIESVM IRIWHFSPTR VLRFTIRWTF 360
  361 VAATMGIAVG LPYYSALLSF FGGFVFAPTT YFIPCIMWLI LKKPKRFSLS WCMNWFCIIF 420
  421 GLVLMIIAPI GGLAKLIYNI QKGTLPNSRC NLPKH