YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16226673, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.22
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLSENEGVE GNTFVVTGGL GFVGAALCLE LVRRGARQVR SFDLRHSSPW SDDLKNSGVR  60
   61 CIQGDVTKKQ DVDNALDGAD CVLHLASYGM SGKEMLRFGR CDEVNINGTC NVLEAAFKHE 120
  121 ITRIVYVSTY NVVFGGKEIL NGNEGLPYFP LDDHVDAYSR TKSIAEQLVL KSNGRPFKNG 180
  181 GKRMYTCAIR PAAIYGPGED RHLPRIVTLT KLGLALFKIG EPSVKSDWIY VENLVLAIIL 240
  241 ASMGLLDDIP GREGQPVAAG QPYFVSDGYP VNTFEFLRPL LKSLDYDLPK CTISVPFALS 300
  301 LGKIFQGFYT VLYPWLSKSW LPQPLVLPAE VYKVGVTHYF SYLKAKEELG YVPFKSSKEG 360
  361 MAATISYWQE RKRRSLDGPT MFTWIAVTIG MSALFAAGWL PDIGPVPFLR AIHLFFFRTI 420
  421 TIVKAVFIVA VVLHVAEGIY AWFLAKRVDP GNAMGWFLQT SALGFFSMRF LLKRAKEHQI 480
  481

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.71
Transmembrane Helix	13	32	0.67
Cytoplasmic	33	292	0.52
Transmembrane Helix	293	307	0.22
Non-Cytoplasmic	308	380	0.68
Transmembrane Helix	381	401	0.93
Cytoplasmic	402	413	0.61
Transmembrane Helix	414	443	0.73
Non-Cytoplasmic	444	452	0.67
Transmembrane Helix	453	472	0.88
Cytoplasmic	473	480	0.78