YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4836948
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGLTRLLNS LSRHTASVTC SPSSSSLLIS RRSLFISAAT HFPVNFSESI TTNASRNCSR  60
   61 SSSFPFNWIE QRRTMFIQTQ STPNPSSLMF SPGKPVMEIG SADFPNSRSA MSSPLAKAIF 120
  121 AIDGIPRLLL QHTIVSSSYN PCFVTKIVSV DAGVVRVFYG SDFVTVTKSD DVTWDILKPD 180
  181 IFAVVMDFYS SGQPLFLDSQ ATAAKDTAIH EDDSETVAMI KELLETRIRP SVQDDGGDIE 240
  241 YCGFDTETGI VKLRMQGACS GCPSSSVTLK SGIENMLMHY VSEVKGVEQE FDGEEEGTSS 300
  301 GPME

Type	Start	End	Confidence
Signal Peptide	1	38	0.79
N-region	1	29
H-region	30	35
C-region	36	38
Cleavage Site	38	39
Non-Cytoplasmic	39	304	0.99