YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX33_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.94
Transmembrane Helix	39	60	0.78
Non-Cytoplasmic	61	80	0.82
Transmembrane Helix	81	102	0.84
Cytoplasmic	103	120	0.80
Transmembrane Helix	121	139	0.95
Non-Cytoplasmic	140	153	0.84
Transmembrane Helix	154	175	0.85
Cytoplasmic	176	185	0.86
Transmembrane Helix	186	208	0.93
Non-Cytoplasmic	209	215	0.80
Transmembrane Helix	216	238	0.88
Cytoplasmic	239	256	0.91
Transmembrane Helix	257	279	0.88
Non-Cytoplasmic	280	295	0.77
Transmembrane Helix	296	318	0.80
Cytoplasmic	319	335	0.78
Transmembrane Helix	336	358	0.94
Non-Cytoplasmic	359	379	0.83
Transmembrane Helix	380	402	0.79
Cytoplasmic	403	409	0.60
Transmembrane Helix	410	433	0.83
Non-Cytoplasmic	434	439	0.78
Transmembrane Helix	440	464	0.88
Cytoplasmic	465	484	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKDKTLPLL DPREPPELTG TKSASKVWAK EFGEESKRLW ELAGPAIFTA ISQYSLGALT  60
   61 QTFSGRLGEL ELAAVSVENS VISGLAFGVM LGMGSALETL CGQAYGAGQI RMMGIYMQRS 120
  121 WVILFTTALF LLPVYIWAPP ILSFFGEAPH ISKAAGKFAL WMIPQLFAYA ANFPIQKFLQ 180
  181 SQRKVLVMAW ISGVVLVIHA VFSWLFILYF KWGLVGAAIT LNTSWWLIVI GQLLYILITK 240
  241 SDGAWTGFSM LAFRDLYGFV KLSLASALML CLEFWYLMVL VVVTGLLPNP LIPVDAISIC 300
  301 MNIEGWTAMI SIGFNAAISV RVSNELGAGN AALAKFSVIV VSITSTLIGI VCMIVVLATK 360
  361 DSFPYLFTSS EAVAAETTRI AVLLGFTVLL NSLQPVLSGV AVGAGWQALV AYVNIACYYI 420
  421 IGLPAGLVLG FTLDLGVQGI WGGMVAGICL QTLILIGIIY FTNWNKEAEQ AESRVQRWGG 480
  481 TAQE