YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7486855, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQWNLPYRK DDVETGVSSR RPLLYPAMHE NPELRWGFIR KVYSIIAFQL LATVAVAATV  60
   61 VTVRPIALFF ATTGLGLALY IVIIITPLIV LCPLYYYHQK HPVNYLLLGI FTLALAFVVG 120
  121 LTCAFTNGKV ILESVILTSV VVLSLTLYTF WAARKGYDFN FLGPFLFGAL TVLIFFALIQ 180
  181 ILFPLGRVSV MIYGCLVSII FCGYIVYDTD NLIKRHTYDE YIWAAVSLYL DIINLFLYLL 240
  241 TVLRALQR

Type	Start	End	Confidence
Cytoplasmic	1	44	0.87
Transmembrane Helix	45	67	0.87
Non-Cytoplasmic	68	75	0.59
Transmembrane Helix	76	97	0.90
Cytoplasmic	98	104	0.75
Transmembrane Helix	105	125	0.95
Non-Cytoplasmic	126	130	0.74
Transmembrane Helix	131	152	0.90
Cytoplasmic	153	160	0.76
Transmembrane Helix	161	182	0.93
Non-Cytoplasmic	183	188	0.70
Transmembrane Helix	189	207	0.91
Cytoplasmic	208	220	0.75
Transmembrane Helix	221	242	0.86
Non-Cytoplasmic	243	248	0.63