YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BQMT_ARATH
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.26
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLMLNGAI TFPKGLGSPG SNLHARSIPR PTLLSVTRTS TPRLSVATRC SSSSVSSSRP  60
   61 SAQPRFIQHK KEAYWFYRFL SIVYDHVINP GHWTEDMRDD ALEPADLSHP DMRVVDVGGG 120
  121 TGFTTLGIVK TVKAKNVTIL DQSPHQLAKA KQKEPLKECK IVEGDAEDLP FPTDYADRYV 180
  181 SAGSIEYWPD PQRGIREAYR VLKIGGKACL IGPVYPTFWL SRFFSDVWML FPKEEEYIEW 240
  241 FKNAGFKDVQ LKRIGPKWYR GVRRHGLIMG CSVTGVKPAS GDSPLQLGPK EEDVEKPVNN 300
  301 PFSFLGRFLL GTLAAAWFVL IPIYMWIKDQ IVPKDQPI

Type	Start	End	Confidence
Cytoplasmic	1	203	0.52
Transmembrane Helix	204	219	0.26
Non-Cytoplasmic	220	304	0.74
Transmembrane Helix	305	327	0.87
Cytoplasmic	328	338	0.83